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@trytoolchest

Toolchest

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  1. toolchest-client-python toolchest-client-python Public

    Toolchest Python client

    Python 15

  2. toolchest-client-r toolchest-client-r Public

    R Client for Toolchest

    R 2

Repositories

Showing 9 of 9 repositories
  • performance-tests Public

    Pipelines that test the performance of FlowDeploy

    trytoolchest/performance-tests’s past year of commit activity
    Python 0 0 0 0 Updated Jun 25, 2024
  • snakemake-tutorial Public

    A Snakemake workflow based on the official short tutorial: https://snakemake.readthedocs.io/en/v7.32.3/tutorial/short.html

    trytoolchest/snakemake-tutorial’s past year of commit activity
    Python 2 1 0 0 Updated Mar 7, 2024
  • lug Public

    Run Python functions locally or in the cloud. Built for computational science.

    trytoolchest/lug’s past year of commit activity
    Python 22 Apache-2.0 1 1 1 Updated Oct 4, 2023
  • toolchest-client-python Public

    Toolchest Python client

    trytoolchest/toolchest-client-python’s past year of commit activity
    Python 15 AGPL-3.0 0 0 1 Updated Sep 6, 2023
  • toolchest-client-r Public

    R Client for Toolchest

    trytoolchest/toolchest-client-r’s past year of commit activity
    R 2 AGPL-3.0 0 2 0 Updated Jul 12, 2022
  • getting-started-python-jupyter Public

    This notebook takes one 16S sample from an Illumina MiSeq run, runs it through Kraken 2 on Toolchest, and plots a rough sketch of the microbial composition of the sample.

    trytoolchest/getting-started-python-jupyter’s past year of commit activity
    Jupyter Notebook 4 AGPL-3.0 0 0 0 Updated Jun 21, 2022
  • pysam Public Forked from pysam-developers/pysam

    Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

    trytoolchest/pysam’s past year of commit activity
    C 0 MIT 275 0 0 Updated Sep 22, 2021
  • Unicycler Public Forked from rrwick/Unicycler

    hybrid assembly pipeline for bacterial genomes

    trytoolchest/Unicycler’s past year of commit activity
    C++ 0 GPL-3.0 137 0 0 Updated Jul 21, 2021
  • kraken2 Public Forked from DerrickWood/kraken2

    The second version of the Kraken taxonomic sequence classification system

    trytoolchest/kraken2’s past year of commit activity
    C++ 0 MIT 276 0 0 Updated May 16, 2021

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