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Add gbif_downloads.tsv and library(here)
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Copied from my local version in trias-project/indicators/data/output. See #3 for possible other location in repo.
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@damianooldoni
damianooldoni committed Feb 21, 2019
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24 changes: 24 additions & 0 deletions data/processed/gbif_downloads.tsv
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gbif_download_key input_checklist gbif_download_created gbif_download_status gbif_download_doi
0002455-171124123535762 ../data/input/eu_concern_species.tsv 2017-11-29 11:43:02 SUCCEEDED doi:10.15468/dl.iyhwjt
0003004-171124123535762 ../data/input/eu_concern_species.tsv 2017-11-30 08:56:33 SUCCEEDED doi:10.15468/dl.fvlr7g
0003007-171124123535762 ../data/input/eu_concern_species.tsv 2017-11-30 09:24:39 SUCCEEDED doi:10.15468/dl.ru5rqz
0003008-171124123535762 ../data/input/eu_concern_species.tsv 2017-11-30 09:28:44 SUCCEEDED doi:10.15468/dl.tla3ir
0003024-171124123535762 ../data/input/eu_concern_species.tsv 2017-11-30 11:00:49 SUCCEEDED doi:10.15468/dl.9unif7
0001588-180131172636756 ../data/input/eu_concern_species.tsv 2018-02-05 12:16:20 SUCCEEDED doi:10.15468/dl.tkwwwh
0001636-180131172636756 ../data/input/eu_concern_species.tsv 2018-02-05 13:49:10 SUCCEEDED doi:10.15468/dl.m2mjuj
0001676-180131172636756 ../data/input/eu_concern_species.tsv 2018-02-05 15:10:08 SUCCEEDED doi:10.15468/dl.1vwwfw
0007989-180131172636756 https://raw.githubusercontent.com/trias-project/pipeline/642fc791c56750e3a7b25b0ba9efa9d30d5736b4/data/input/modelling_species.tsv 2018-02-20 15:53:37 SUCCEEDED https://doi.org/10.15468/dl.6cljf9
0008516-180131172636756 https://raw.githubusercontent.com/trias-project/pipeline/642fc791c56750e3a7b25b0ba9efa9d30d5736b4/data/input/modelling_species.tsv 2018-02-21 08:48:06 SUCCEEDED https://doi.org/10.15468/dl.qm87vt
0020843-180131172636756 ./data/input/species_test_invasion_curve.tsv 2018-03-14 12:49:59 SUCCEEDED https://doi.org/10.15468/dl.xrm1lc
0033087-180508205500799 https://raw.githubusercontent.com/trias-project/pipeline/642fc791c56750e3a7b25b0ba9efa9d30d5736b4/data/input/modelling_species.tsv 2018-06-26 11:42:26 SUCCEEDED https://doi.org/10.15468/dl.kwlgmi
0045622-180508205500799 ../data/input/plants_species_test_downscaling.tsv 2018-07-19 08:12:24 SUCCEEDED https://doi.org/10.15468/dl.iyi6hg
0003300-181003121212138 https://raw.githubusercontent.com/trias-project/pipeline/9f20d33a14696bc42d059a2e0f50fb11c4f97d35/data/input/occ_indicator_emerging_species.tsv 2018-10-10 08:49:01 SUCCEEDED https://doi.org/10.15468/dl.5xygvn
0003400-181003121212138 https://raw.githubusercontent.com/trias-project/pipeline/a004f59c84a820b8dcee3a5d304df38c9daeded3/data/input/occ_indicator_emerging_species.tsv 2018-10-10 14:03:48 SUCCEEDED https://doi.org/10.15468/dl.m7blny
0003460-181003121212138 https://raw.githubusercontent.com/trias-project/pipeline/363d2037708469a9f63609f45a3c603527202a65/data/input/occ_indicator_emerging_species_part1.tsv 2018-10-10 16:23:07 CANCELLED https://doi.org/10.15468/dl.h3dcgv
0003482-181003121212138 https://raw.githubusercontent.com/trias-project/pipeline/363d2037708469a9f63609f45a3c603527202a65/data/input/occ_indicator_emerging_species_part2.tsv 2018-10-10 16:58:22 SUCCEEDED https://doi.org/10.15468/dl.n2fwhm
0003489-181003121212138 https://raw.githubusercontent.com/trias-project/pipeline/363d2037708469a9f63609f45a3c603527202a65/data/input/occ_indicator_emerging_species_part3.tsv 2018-10-10 17:15:34 SUCCEEDED https://doi.org/10.15468/dl.ghpdpn
0008278-181003121212138 https://raw.githubusercontent.com/trias-project/pipeline/32950c1bd94df3747bc05e5a4aac388c3333cd0a/data/input/species_test_correctness_integrity_rgbif_downloads.tsv 2018-10-18 09:59:59 SUCCEEDED https://doi.org/10.15468/dl.eyab89
0008376-181003121212138 https://raw.githubusercontent.com/trias-project/pipeline/32950c1bd94df3747bc05e5a4aac388c3333cd0a/data/input/species_test_correctness_integrity_rgbif_downloads.tsv 2018-10-18 12:07:11 SUCCEEDED https://doi.org/10.15468/dl.efmrtb
0012078-181003121212138 https://raw.githubusercontent.com/trias-project/pipeline/occ_indicators_downscaling/data/input/occ_indicator_emerging_species_AOO.tsv 2018-10-24 09:52:39 SUCCEEDED https://doi.org/10.15468/dl.kg0uxf
0009008-181108115102211 https://raw.githubusercontent.com/trias-project/pipeline/improve-grid-size-effects-%2340/data/input/occ_indicator_emerging_species_AOO.tsv 2018-11-26 17:55:59 SUCCEEDED https://doi.org/10.15468/dl.asrptv
0044021-181108115102211 2019-02-21T08:52:36.045+0000 SUCCEEDED https://doi.org/10.15468/dl.jo7tj6
4 changes: 3 additions & 1 deletion src/belgium/download.Rmd
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Expand Up @@ -26,6 +26,8 @@ Load libraries:
# Tidyverse packages
library(tidyverse)
library(lubridate)
# to find files
library(here)
# GBIF package
library(rgbif)
# Project package
Expand All @@ -35,7 +37,7 @@ library(trias)
Define the file where all downloads we've trriggered are added:

```{r set_file_paths}
downloads_output_file <- "../data/output/gbif_downloads.tsv"
downloads_output_file <- here("data", "processed", "gbif_downloads.tsv")
```

# Define download query parameters
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