Tags: traitecoevo/traits.build
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traits.build v2.0.0 release (#191) - traits.build paper published in Sep 2024 in Ecological Informatics (DOI: 10.1016/j.ecoinf.2024.102773) - Minor updates to ontology, which is now version 1.0.0 - Added standard error and standard deviation as value types Moved functions to austraits package and made austraits package a dependancy Renamed some of the functions that are now moved to austraits package bind_databases <-- build_combine convert_df_to_list <-- util_df_to_list convert_list_to_df1 <-- util_list_to_df1 convert_list_to_df2 <-- util_list_to_df2 Renamed functions still also assigned their old name, with a deprecation warning indicating the new name plot_trait_distribution_beeswarm, trait_pivot_longer and trait_pivot_wider had been in both austraits and traits.build packages and have now been removed from traits.build Import new austraits function flatten_database (had been suggested to be database_create_combined_table) Refactoring of test functions used by dataset_test Added tests using the dataset_test function, so it is checked explicitly by traits.build (run on Example datasets) Minor bug fixes Issues addressed since last traits.build release: Issue #150 & Issue #154 (error if no contexts) Issue #179 (incorrect test written that flagged an error if input/output units identical) Issue #171 (SE required as a value type) Issue #131 (remove duplicate functions) Issue #183 (deprecated function still being used) Issue #185 (context table columns mis-ordered, dataset test failing) Issue #143 (add dataset_test tests) --------- Co-authored-by: Daniel Falster <daniel.falster@unsw.edu.au> Co-authored-by: Fonti Kar <f.kar@unsw.edu.au> Co-authored-by: Sophie Yang <78716301+yangsophieee@users.noreply.github.com>
version 1.0.1 * Update testdata.R (#134) - fixes to tests described in #133 - for fields like basis_of_record, splitting input into `words` since fixed values sometimes multiple terms - add "unknown" to lists of allowed values * combined with fixes to metadata files in austraits.build * Add less/greater than or equal signs to exceptions for metadata * fixed taxonomic_updates table to include `aligned_name_taxon_id`, `aligned_name_taxonomic_status` * changed `process_standardise_names` to not capitalise an "x" indicating a hybrid taxon * some minor edits to schema * report edits - fix reports to work with new taxon scheme - Remove bins and ranges from plot_trait_distribution_beeswarm --------- Co-authored-by: yangsophieee <sophie.yang917@gmail.com> Co-authored-by: Sophie Yang <78716301+yangsophieee@users.noreply.github.com> Co-authored-by: Elizabeth Wenk <ehwenk@gmail.com>