A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.

centroids and distances

Bayesian SEIR model to estimate the effects of social-distancing on COVID-19

Apptainer in Docker!

Jupyter notebooks, jobscripts and other files for the "Getting started with AI on LUMI" workshop

Maximum Likelihood Amplicon Pipeline

Workflow for functional annotation of a set of bacterial genomes

Rapid comparison and dereplication of genomes

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

Useful bash one-liners for bioinformatics.

Sequence Generation for Differential Expression Analysis and Beyond

PSADD -- PhyloSeq ADDitions

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

dbSNP

SARS-CoV-2 sequencing workflow

Ultra-deep search for novel viruses

Variational autoencoder for metagenomic binning

Introduction to Bayesian Data Analysis for Cognitive Science by Nicenboim, Schad, Vasishth

Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019

🍑 Pomological plot theme for ggplot2

Tips for organising your data analysis project

Reproducibility slide deck

2021 Fall R stats course at University of Tartu Institute of Technology

Example datasets

The course description