VarFish: comprehensive DNA variant analysis for diagnostics and research
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May 12, 2025 - Python
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varfish
Here are 29 public repositories matching this topic...
VEP-like tool for sequence ontology and HGVS annotation of VCF files
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May 12, 2025 - Rust
A port of biocommons/hgvs to the Rust programming language
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Mar 31, 2025 - Rust
Genome annotation based on Rust and RocksDB
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May 12, 2025 - Rust
(Legacy) Annotate variants for import into VarFish server.
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Jan 23, 2024 - Java
Setup VarFish as using Docker Compose
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Jan 24, 2024 - Makefile
A port of biocommons/seqrepo to the Rust programming language
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Feb 4, 2025 - Rust
Download public databases for VarFish
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May 16, 2025 - Python
VarFish REST API client (CLI + Python package)
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Jan 24, 2025 - Python
Rust-based background worker for varfish-server
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Apr 28, 2025 - Rust
Clinvar data builds for annonars
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May 5, 2025 - HCL
VarFish (Snakemake) Client Workflow for Querying Snakemake
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May 8, 2023 - Python
DEPRECATED Convert annotation database files to Var:fish: import format
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Jan 24, 2024 - Makefile
DEPRECATED, use https://github.com/bihealth/varfish-docker-compose instead
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Jan 24, 2024 - Makefile
Simple REST API wrapper for CADD-scripts
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Dec 3, 2024 - Python
Repository for building IGSR data sets for use in VarFish
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Jan 24, 2024 - Python
(Partial) port of biocommons/bioutils to Rust
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Jan 24, 2024 - Rust
VarFish (Snakemake) Client Workflow for Validation
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Apr 22, 2022 - Python
(Next-generation; in-development) VarFish Docker Compose
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Feb 3, 2025 - Shell
Experimental VarFish CLI based on aws-smithy
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Dec 25, 2023 - Dockerfile
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