Uniform Manifold Approximation and Projection
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Nov 13, 2025 - Python
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umap
Here are 80 public repositories matching this topic...
Visualization for a Retrieval-Augmented Generation (RAG) Assistant 🤖❤️📚
visualization machine-learning openai umap rag huggingface streamlit large-language-models llm retrieval-augmented langchain retrieval-augmented-generation
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Nov 20, 2025 - Python
TorchDR - PyTorch Dimensionality Reduction
python data-science cuda pytorch embeddings dimensionality-reduction tsne manifold-learning umap large-scale multi-gpu optimal-transport similarity-search spectral-embedding embedding-evaluation data-vizualisation neighbor-embedding affinity-matrix
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Nov 15, 2025 - Python
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
bioinformatics big-data genomics clustering scrna-seq graph-analytics memory-efficient tsne differential-expression umap dimension-reduction single-cell-genomics single-cell-rna-seq scalable-data-analysis single-cell-atac-seq multiomics cite-seq pseudotime scatac-seq gene-modules
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Nov 19, 2025 - Python
create "Karpathy's style" 2d images out of your image embeddings
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Dec 27, 2022 - Python
Using machine learning on your anki collection to enhance the scheduling via semantic clustering and semantic similarity
nlp ai flashcards clustering scheduler pca machinelearning kmeans anki embedding doc2vec bert umap latent sentence-embeddings neighbourhood sbert sementics
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Oct 5, 2024 - Python
A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.
visualization workflow data-science snakemake clustering heatmap data-visualization high-dimensional-data pca dimensionality-reduction unsupervised-learning cluster-analysis principal-component-analysis clustering-algorithm umap cluster-validation leiden-algorithm densmap clustree
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Sep 12, 2025 - Python
A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.
visualization machine-learning dimensionality-reduction nearest-neighbors single-cell graph-layout umap diffusion-process denoising high-dimensional
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Apr 4, 2021 - Python
Estimate dataset difficulty and detect label mistakes using reconstruction error ratios!
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Jan 10, 2025 - Python
DImensionality REduction in JAX
data-science machine-learning cpu gpu data-visualization embeddings pca dimensionality-reduction tsne umap tpu jax random-projection vector-embeddings
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Nov 21, 2025 - Python
Augmenting the Interpretability of GraphCodeBERT for Code Similarity Tasks
code code-analysis pca-analysis semantic-similarity similarity-measures umap interpretability code-similarity clone-detection codebert graphcodebert
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Jul 23, 2025 - Python
represent each cell in UMAP plots as a pie chart
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Sep 27, 2021 - Python
Using word embeddings, TFIDF and text-hashing to cluster and visualise text documents
clustering dimensionality-reduction text-processing d3js document-clustering umap computational-social-science text-clustering text-features
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Nov 7, 2019 - Python
1000 Genomes Project population visualizations using dimensionality reduction
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Dec 8, 2022 - Python
pytorch implementation of Deep Supervised Hashing
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Feb 15, 2023 - Python
Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
python methylation epigenetics illumina methylation-microarrays cnv umap minfi tumor-classification conumee methylation-extractor methylation-analysis methylation-plot
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Nov 19, 2025 - Python
KNRScore is a Python package for computing K-Nearest-Rank Similarity, a metric that quantifies local structural similarity between two maps or embeddings.
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Aug 30, 2025 - Python
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
visualization visualisation pca data-analysis ptm fcs umap mass emd cytof cytometry signalling cytobank ptms organoids cell-communication-lab scprep dremi tape-lab
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Dec 7, 2023 - Python
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