🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
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Jul 10, 2026 - Rust
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transcriptomics
Here are 12 public repositories matching this topic...
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Aug 11, 2022 - Rust
A tool for projecting genomic alignments to transcriptomic coordinates
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May 28, 2024 - Rust
De novo clustering of long transcript reads into genes
bioinformatics clustering transcriptomics oxford-nanopore reference-free pacbio-iso-seq annotation-free
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Dec 15, 2025 - Rust
A Rust library and CLI tool to handle genomic transcripts
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Apr 14, 2026 - Rust
Deterministic Rust IO library for spatial transcriptomics datasets
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Jun 30, 2026 - Rust
Deterministic projection crate that turns precomputed scalar fields into 3D mesh, contour, and export artifacts.
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Jun 30, 2026 - Rust
Deterministic orchestrator crate for sequential pipeline: kira-spatial-io (read H5) kira-spatial-field (dense gene field) kira-spatial-core (derived scalar: raw / |grad| / laplacian) kira-spatial-3d (mesh, contours, stitching, metrics, exports)
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Jun 30, 2026 - Rust
High-performance multi-omics integration: VCF · RNA-seq · methylation · proteomics · scRNA-seq → HTML/JSON reports, real-time TUI. Written in Rust.
rust cli bioinformatics genomics conda vcf methylation proteomics mass-spectrometry transcriptomics single-cell differential-expression mzml umap rayon epigenomics multi-omics mofa
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Jul 4, 2026 - Rust
kira-spatial-field is a deterministic Rust library for constructing immutable scalar fields from spatial transcriptomics expression matrices.
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Jun 30, 2026 - Rust
Deterministic, SoA-first Rust library for spatial primitives shared across Kira tools.
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Jun 30, 2026 - Rust
Efficiently parse transcripts metadata from the detected_transcripts.csv file generated by Vizgen MERFISH pipeline.
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Nov 11, 2025 - Rust
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