RNAseq pipeline centered on Salmon
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Updated
Nov 21, 2024 - Shell
RNAseq pipeline centered on Salmon
creates text from audio of A/V input file, using docker, sphinx. extracts keywords and NLP entities. leverages OpenNews, Stanford, Oxford, CMU and more
Agent skill for the Supadata API — transcripts, metadata, web scraping, and AI extraction
A set of scripts related to bed12 (or bed3, bed4) data processing
CLI scripts replacing 5 Chrome extensions for Google NotebookLM — bulk import, transcript download, cross-notebook search & more. Built on notebooklm-py.
Claude Code agent skills. Includes youtube-summary: a YouTube video summarizer that writes structured notes (TL;DR, takeaways, chapters) with optional slide extraction.
Private, speaker-labeled transcripts of any multi-speaker recording — 100% local, on your GPU
Manage Google NotebookLM tasks with command-line scripts that replace browser extensions for bulk imports, transcript downloads, and cross-notebook searches.
Isolated crons, scripts, reminders, and status checkers sent it but the agent forgot? Write deliveries into the session transcript.
Daily cron that converts Feishu/Lark Minutes transcripts into semantic, beautiful HTML notes — powered by official lark-cli + Claude.
Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies
Mirror cron/script deliveries into the agent's session transcript — scheduled & isolated-cron messages persist in context. Session continuity, no core changes.
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