DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Structural variant and indel caller for mapped sequencing data

Fast and accurate gene fusion detection from RNA-Seq data

Graph realignment tools for structural variants

A method for variant graph genotyping based on exact alignment of k-mers

The Modular Aligner and The Modular SV Caller

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

Population-wide Deletion Calling

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

Structural variant VCF annotation, duplicate removal and comparison

Method to optimally select samples for validation and resequencing

Identification of segmental duplications in the genome

Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA

Linear-time, low-memory construction of variation graphs

Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals

Hybrid approach for detection of Insertions and Deletions from NGS data

Identify split reads in given chromosomal regions

Linked-reads based structural variant caller with barcode indexing

Studies structural variant callers on large simulated populations sequenced with PacBio CCS

A benchmarking tool for structural variation (SV) detection tools