Multi-subject Single Cell Deconvolution
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Mar 4, 2024 - R
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statistical-genetics
Here are 30 public repositories matching this topic...
Find causal cell-types underlying complex trait genetics
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Feb 25, 2025 - R
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-analysis staar-pipeline
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Mar 23, 2025 - R
R package to perform Bayesian Genome-Wide Association Studies
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Oct 10, 2023 - R
A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
meta-analysis statistical-genetics rscript frequentist-methods pleiotropy multiple-traits overlapping-samples cross-phenotype genetic-epidemiology gwas-tools mixture-distributions gwas-summary-statistics genetic-overlap
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Jun 19, 2025 - R
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation multi-trait-analysis rare-variant-analysis staar-pipeline
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Dec 3, 2024 - R
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
meta-analysis statistical-genetics whole-genome-sequencing functional-annotation rare-variant-analysis metastaar-procedure
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Nov 9, 2024 - R
Estimate genetic correlation using predicted expression
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Mar 8, 2018 - R
metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.
gwas meta-analysis statistical-genetics genome-analysis summary-statistics multivariate-analysis rscript phewas pleiotropy multiple-studies score-test multiple-traits overlapping-samples cross-phenotype genetic-epidemiology metausat
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May 27, 2021 - R
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-analysis staar-pipeline
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Oct 16, 2024 - R
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
statistical-genetics whole-genome-sequencing functional-annotation multi-trait-analysis rare-variant-analysis multistaar-procedure
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Nov 14, 2024 - R
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation staar-pipeline
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Nov 19, 2024 - R
Tools for regression using pre-computed summary statistics
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Jul 4, 2024 - R
Association testing for genetically regulated co-expression.
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Aug 15, 2025 - R
mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)
gwas statistical-tests statistical-genetics genome-analysis multivariate-analysis multiple-traits cross-phenotype genetic-epidemiology proportional-odds-regression gwas-tools
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Apr 4, 2022 - R
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation staar-pipeline
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Oct 3, 2023 - R
GAUDI: a penalized regression based PRS method designed specifically for admixed individuals
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Jun 19, 2024 - R
Replication of an mQTL analysis using the ``locus'' method on simulated data
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Nov 6, 2018 - R
A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAARlite pipeline
meta-analysis statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-meta-analysis metastaar-lite-pipeline
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Jun 7, 2025 - R
USAT uses a data-adaptive weighted score-based test statistic for testing association of multiple continuous phenotypes with a single genetic marker.
gwas statistical-genetics genome-analysis manova multivariate-analysis rscript pleiotropy usat multiple-phenotypes score-test cross-phenotype genetic-epidemiology
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Aug 6, 2019 - R
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