somatic-variant-calling

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NaghmehRezaei / Sarekflow-somatic-NGS-platform

Research-use full-stack platform for matched tumor–normal somatic variant calling with React, FastAPI, Celery, Nextflow, SLURM, Apptainer, nf-core/sarek, GATK Mutect2, MultiQC, and secure results delivery.

react docker bioinformatics genomics nextflow hpc ngs slurm multiqc mutect2 nf-core fastapi apptainer sarek somatic-variant-calling

Updated Jul 24, 2026
Python

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