Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.
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Dec 2, 2024 - Python
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snp-genotyping
Here are 9 public repositories matching this topic...
Variant calling + processing pipline using GATK based in Snakemake
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May 31, 2018 - Python
Wheat BRIL database created using FLASK server side, angularjs is heavily used at front end
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Nov 12, 2018 - Python
SNP pipeline using Snakemake for the Weisrock Lab's Tiger Salamander project.
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Dec 19, 2019 - Python
Implementation of LAVA algorithm in Seq language.
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Jan 14, 2021 - Python
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
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Sep 21, 2023 - Python
Align against a reference genome and call variants
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Jun 16, 2021 - Python
Codes i wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"
python bash environment r snps genome metrics beets ecology population-genetics genotype ge snp-genotyping popgenome
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Oct 7, 2019 - Python
A python script to remove duplicate snps from plink files and recode the resultant files into plink binaries free of duplicate snps
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Jun 27, 2020 - Python
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