ImageJ 1.x implementation of a 3D real-time single molecule localization microscopy algorithm based on lookup tables

An R Package for the functions generate_filaments() and crescent_kf(), for use in SMLM (DNA-PAINT) image segmentation of filamentous structures, such as microtubules.

Superresolution visualization of 3D protein localization data from a range of microscopes

CALM (2-sample Comparative Analysis of 3D Localisation Microscopy data) is an analysis pipeline, which organizes localisation microscopy data into clusters of different dimensions and calculated the samples’ statistical parameters using various numerical methods.

All this is part of my Projektarbeit (student project) @ TU Wien 2021

Superresolution visualization of 3D protein localization data from a range of microscopes . Mirror of https://github.com/bencardoen/smlmvis

Uses Catmull Rom Splines optimisation to align multiple channels in Single Molecule Localization Microscopy (or Super Resolution Microscopy). Done as part of the Thesis of Mels Habold at the Quantative Nanoscopy group of Delft University of Technology in 2022.

Towards enhanced particle averaging for single-molecule localization microscopy using geometric deep learning

Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"

Object / density detection in astigmatic superresolution dSTORM microscopy

extensions and plugin additions for python-microscopy (PYME)

Adaptive Optics plugin for MicroManager

Software to process single-molecule and diffraction-limited polarisation camera image data.

Localization Analyzer for Nanoscale Distributions (LAND) - 2D and 3D Analysis of SMLM Data

Single Molecule Imaging Simulator with Advanced Fluorophore Photophysics

This is the original repo of the DECODE implementation (mirrored by github.com/TuragaLab/DECODE).

An ImageJ plugin that uses the Projected-line FWHM resolution method to determine the image resolution of a final image.

This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

A collection of tools for painting super-resolution images