Implementation of K-means that categorizes sequences into groups based on similarity score derived from Smith-Waterman algorithm.
Expanded version of the traditional Smith Waterman algorithm for local alignment
Algorithms to solve bioinformatics problems
Easy to use and modify implementation of Smith-Waterman Algorithm.
Zadanie na uczelnie. Treść: Napisz program wyszukujące wszystkie dopasowane pod sekwencje składające się z ponad k aminokwasów. Autorzy: Desert_Fox_Fenek&Ciemny99
A robust tool utilizing dynamic programming algorithms for performing multiple sequence alignments (MSA) of DNA or protein sequences. This tool generalizes the Needleman-Wunsch and Smith-Waterman algorithms to support both global and local alignments for multiple sequences, providing a powerful solution for bioinformatics analyses.
💻 Project for the course of Algorithms for Bioinformtics
Python Implementation of the Smith-Waterman Algorithm for Bioinformatics
Longest Common Subsequence algorithm. Global Alignment is the Needleman Wunsche algorithm and the local alignment is Smith Waterman algorithm
Relevant files used for the project 'Characterization of Implied Scenarios as Families of Common Behavior'.
El presente trabajo muestra la aplicación de algoritmos de alineación de secuencias conocidos como needleman-wunsch (global), smith-waterman (local) y semi-global con sus variantes (kband o afín de costo por gap).
Text Similarity Analysis, POS tagging, Hidden markov models, Dependency parser
Lots of protein
Parallelizing the Smith-Waterman alignment algorithm using mpi4py
Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.
Implementing the Smith-Waterman algorithm in Python
🔬🧬 Algoritmo de alinhamento Smith Waterman em Python
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