Smith-Waterman alignment implementation

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Smith Waterman algorithm Java implementation

A header-only templated C++17-library for fast and versatile sequence alignment computations.

This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.

Implementation of Smith-Waterman local alignment model- find closest local alignments in two given amino acid sequences. BLOSUM was used as the scoring matrix.

Global and Local Sequence Alignment

Web App para alinhamento de sequências de DNA

implementation and visualizations for sequence alignment algorithms

Sequence Alignment Algorithms: Dot Matrix Representation, Needleman-Wunsch Algorithm, and Smith-Waterman Algorithm.

Applications that compute pairwise alignments of two biological sequences

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

Implement parallel Smith Waterman algorithm on CUDA

MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.

I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.

🧬🔍 Smith-Waterman pairwise sequences alignment ✍️🔡

R package for global alignment between two genomic sequences

Python implementation of Striped Smith-Waterman Algorithm