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madisonlondon / Nucleotide-Alignment

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This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.

smith-waterman nucleotide-sequence smith-waterman-alignment nucleotide-alignment
  • Updated Apr 18, 2020

Amirreza-Mousavi / Protein_Normalized_SW_Similarity_Score

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An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

r psa computational-biology smith-waterman protein drug-discovery protein-sequences fasta sequence similarity-score sequence-alignment similarity-matrix dti fasta-sequences pairwise-alignment local-alignment smith-waterman-alignment computer-aided-drug-design biostrings dti-prediction
  • Updated Dec 23, 2021
  • R

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