Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
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Updated
Mar 14, 2025 - Nextflow
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salmonella
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This Nextflow pipeline, gelidonyAMR, has been developed for analyzing Salmonella Infantis genomes, including genome assembly, antimicrobial resistance (AMR) profiling, MLST and cgMLST typing. It is designed for use in a Conda environment and is part of the my PhD project
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Updated
Feb 14, 2025 - Nextflow
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