🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

RNAseq pipeline centered on Salmon

A Ruby toolset for interacting with the OStatus suite of protocols

Differential expression and allelic analysis, nonparametric statistics

연어봇 - SalmonBot

A salmon plugin for WordPress

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

Population genetics using microsatellites for different salmonid species

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2

A general run reconstruction model for the commercial sockeye salmon fishery in Bristol Bay, Alaska. This model leverages information from age and genetic composition samples to apportion mixed-stock catches and account for interception among terminal fishing districts.

Datasets and related knowledge from the IYS Salmon Status and Trends workshops

Tables for the ICES Working Group on North Atlantic Salmon (WGNAS) for the ORE-DiaPFC rivers

Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish

Data from a longterm sea lice monitoring in the Broughton Archipelago, British Columbia, Canada by Alexandra Morton (Raincoast Research) and the Salmon Coast Field Station (salmoncoast.org)

Count your fastq-formatted rna-seq reads with Salmon

rCAX R package: an R client to access the REST API for the StreamNet Coordinated Assessments tables

Administration tools and utilities used by the PSC Coho Technical Committee to administer FRAM model runs.

Spawner and fraction wild data for the NWFSC Status Reviews.