reproducible-workflows

A curated list of reproducible research case studies, projects, tutorials, and media

Live code in Pandoc Markdown

REANA: Reusable research data analysis platform

My NixOS wayland dotfiles

Collective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:

How to use Jupyter notebooks and R markdown to create living documents and reproducible reports.

Textbook that provides JavaScript and Python code to create open reproducible remote sensing analyses and workflows in Google Earth Engine.

Module 3: Reproducible Research and Data Analysis

🍎 Pipeline for Processing SISVAN Microdata on Nutritional Status Monitoring in Brazil

Governed execution harness for AI agents using professional tools, with deterministic validation, human approval, and verifiable evidence.

Revistas de Economia com a nova classificação Qualis 2019: lista extraída a partir daquele PDF de quatrocentas páginas!

Structured EVTAL pipeline for extracting, cleaning, and analyzing HTML web data with spaCy-based NLP features.

Get your Ph.D. reproducible with Python and Github

The accompanying R package for Rajeg's (2019) PhD thesis titled "Metaphorical profiles and near-synonyms: A corpus-based study of Indonesian words for Happiness" (PDF👇https://doi.org/10.26180/5cac231a97fb1).

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

Professional Python project using Polars for continuous intelligence.

Structured EVTL pipeline for reliable extraction and transformation of data from HTML web pages.

Structured EVTL pipeline for reliable ingestion and transformation of JSON data from web APIs.

Professional Python project for detecting static anomalies

The Micro Remote Sensing course - provides a complete introduction to reproducible flight planning, acquisition, pre-processing, and exemplar analysis of high resolution low budget image data using commercial and open software systems.