Plot position weight matrices (PWM)
Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".
Plot position weight matrices (PWM)
A Nextflow workflow for processing and analyzing CRAC data
RNA-binding protein motif analysis
Package for the definition of biniding sites for iCLIP data
RBP-Data-Processing is a repository containing R code for processing RNA-binding protein (RBP) datasets. The code imports the data table, performs data cleaning and transformation operations, and saves the processed dataset. It provides a convenient and reproducible workflow for analyzing RBP data obtained from external sources.
Workflow for automated (e)CLIP analysis. From raw fastq to peak calling and motif analysis.
BRIO: a web server for RNA sequence and structure motif scan (https://doi.org/10.1093/nar/gkab400)
CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different cir…
RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.
RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins
R package for unbiased enigm RNA-binding protein (RBP) prediction based on shrinkage discriminant analysis. Enigm RBPs have been found to make up for one half of all RBPs.
Add a description, image, and links to the rna-binding-proteins topic page so that developers can more easily learn about it.
To associate your repository with the rna-binding-proteins topic, visit your repo's landing page and select "manage topics."