GenomeTools genome analysis system.
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
An ultrafast tool for genome-wide survey of microsatellites and primer design
A video player component for looping inner sections of video. Packaged as an npm library and cdn script.
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
SLURM-ready bash scripts to run the complete REPET pipeline
Some of the mapping and normalization scripts used in our NCB paper PMID:31209294
A command line tool to try executing a shell command and retry if it fails. Optionally repeat with time intervals even if it succeeds. 🔁 https://www.npmjs.com/package/try-cli
Mask genomic repeats and low-complexity regions for the Scrambling in the Tree of Life project
De novo repeat inference from long reads
Identify and characterize repeat expansions in long read data
Project Job Insights (Python)
This is a tool for finding micro satellites in a chromosome.
Find palindrome/inverted repeats in contigs/scaffolds
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