A C++ tandem repeat finding library

Explore palindromes

Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes

SLURM-ready bash scripts to run the complete REPET pipeline

This is a tool for finding micro satellites in a chromosome.

Find palindrome/inverted repeats in contigs/scaffolds

A command line tool to try executing a shell command and retry if it fails. Optionally repeat with time intervals even if it succeeds. 🔁 https://www.npmjs.com/package/try-cli

Some of the mapping and normalization scripts used in our NCB paper PMID:31209294

PERF is an Exhaustive Repeat Finder

De novo repeat inference from long reads

Identify and characterize repeat expansions in long read data

Project Job Insights (Python)

De novo repeat inference from long reads

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

GenomeTools genome analysis system.

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

A video player component for looping inner sections of video. Packaged as an npm library and cdn script.

Transposable Element Subfamily Detection

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

Identify and find telomeres, or telomeric repeats in a genome.