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read-mapping

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orangeSi / GSSplayground

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Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…

visualization svg bioinformatics vcf depth snp comparative-genomics bam synteny transcriptomics genomes sv read-mapping long-reads genome-viewer crosslink genecluster structure-variation indel igv-like
  • Updated Jul 12, 2020
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NIGMS / Intro-to-Pangenomics

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This repository provides a comprehensive module on graphical pangenomics, guiding users through building, indexing, mapping, and visualizing pangenome graphs. The module runs on Google Cloud Platform using Jupyter notebooks and includes tools like PGGB, vg, BLAST, and Bandage.

bioinformatics gcp computational-biology population-genomics variant-calling high-throughput-sequencing genome-analysis genome-assembly illumina-sequencing read-mapping pangenomics genome-mapping pangenome-graph
  • Updated Jun 6, 2025
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