A comprehensive tutorial about GWAS and PRS

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

Quantitative Trait Cluster Association Test in R

Tutorial for visualising admixture on a map

R package and web app for spatial visualisation of admixture on a projected map

starmie: plotting and inference for population structure models 🌟

R implementation of the BAPS software for Bayesian Analysis of Population Structure

Scripts for file processing and analysis in phylogenetics and phylogeography

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

rhierbaps: R implementation of hierBAPS

Scripts and notes related to the manuscript: Stuart KC & Cardilini APA 2021 Signatures of selection in a recent invasion reveal adaptive divergence in a highly vagile invasive species. Molecular Ecology 30(6):1419-1434, doi.org/10.1111/mec.15601 † joint first author ‡ joint last author.

Mutual nearest neighbor graphs for population structure inference and visualization 🐙

An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data

Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

This study assessed the spatial genetic variation in P. falciparum populations in Mali

Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"

STAT488 - Multivariate Statistics final project at Loyola University Chicago

Fine-scale genetic structure in South Western Cameroon

R-markdown script for geographic population genetic structure analysis with Tess3r