Hybridization detection using phylogenetic invariants

DFOIL: Introgression Testing for Five Taxa

Visualing species tree from ASTRAL with gene tree discordance

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

Visualization of Hybrid Organic compounds with graphs

Hybridization Detection with Convolutional Neural Networks

Hybrid discretisation methods in Julia (VEM, HDG, HHO, etc) 🚧 🚧 🚧 Work in progress 🚧 🚧🚧

Suitable Finite Element methods for Porous Media flow using Firedrake Project framework

Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

All scripts and pipelines related to inferring ploidy, hybridization and MAT locus architecture in the lichen symbionts from the genus Letharia

Code used to analyse WGS data of giraffe in Coimbra et al. 2023

This repository contains all data and scripts used to analyze reproductive isolation barriers for the "Testing the predictions of reinforcement: long-term empirical data from a damselfly mottled hybrid zone" manuscript.

The LaTeX source for my PhD Thesis, the viva for which took place in September, 2016.

Hybridization Models Maximum Likelihood Estimator

Tutorial, code, and data for Evolution 2017

This repository includes R scripts and data for analysing the effect of elevated temperature on larval morphology in Triturus newts. Associated results are published in [too add upon acceptance].

Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

Code to accompany Pinsky et al. 2023 Coral Reef Population Genomics in an Age of Global Change. Annual Review of Genetics

Back up for the review and scripts used in the article "The evolutionary outcomes of climate-change-induced hybridization in insect populations." published in COIS,

Time series prediction with hybridization approachs, combining LSTM and XGBoost.