WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
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Nov 4, 2025 - Python
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polyploidy
Here are 9 public repositories matching this topic...
Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche-psb/wgd.
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Jan 6, 2026 - Python
Robust identification of orthologous Synteny with the Orthology Index
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Feb 1, 2026 - Python
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
numpy array haplotypes bayesian-inference dna-sequences genotyping polyploidy haplotype-assembly haplotype-blocks polyploid-genotyping
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Nov 17, 2025 - Python
Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
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Jul 25, 2025 - Python
Scripts, information and data for publication in APPS.
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May 2, 2024 - Python
AKRUP: ancestral karyotype reconstruction universal pipeline
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Dec 4, 2023 - Python
A package for analyzing allele-specific expression in polyploid organisms
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Jan 12, 2026 - Python
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