The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.

R package for accessing the AusTraits Plant database and working with traits.build databases

R package for standardizing and harmonizing scientific names of plants and animals

A versatile framework for single-cell transcriptomic data analysis in plants.

Source for AusTraits

🐟Catalogue of Life toolkit for R

Fetch Forest Inventory data from many countries

Plantas endémicas del Perú

An R package to get taxonomic and distribution data for the ~6500 vascular plants present in the Iberian Peninsula and Balearic Islands

Microbiome analysis for phosphate-defense interaction

How does disturbance on a landscape affect the establishment of new polyploid plant species?

Render eFP browser-like visualizations in R

Retrieve data from the USDA PLANTS Database

Which genomes are where in the big DBs?

R Script for investigating past and present species distribution using MaxEnt (machine learning algorithm) and Environmental PCA (PCA-env) for niche dynamics of the species

code for Frazee et al. paper in journal G3 (in prep)

Code, data, and results for Richmond et al. Temporal variation and its drivers in the elemental traits of four boreal plant species. Manuscript published at the Journal of Plant Ecology.

An R package to identify plant transcription factors from protein sequence data and classify them in families

This repository contains the R scripts employed to perform statistical analyses and generate the plots of the manuscript entitled "Giraldo-Kalil et al. 2022. Patterns of leaf trait variation underlie ecological differences among sympatric tree species of Damburneya in a tropical rainforest (Am. J. Bot, 109(9): 1394-1409))"

Artifial nural networks (script and example files)