phenomics

Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.

An interactive corn plant point cloud segmentation and annotation software (version 2.0)

phenol: Phenotype ontology library

Internationalisation of the HPO content

A phenotyping pipeline for Python

A Python package for AI-based comprehensive analysis of sarcomere structure and function in cardiomyocytes

Coordination of Data Products and Standards for TERRA reference data

Standardise and share computable disease definitions

Computation of root phenes from 3D point clouds.

HPO archive of the ontology and annotations

Modular, Scalable Phenomic Data Processing Pipelines

Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

Pipeline for segmenting faba bean seed images and extracting shape, size, and color features to CSV using SAM2.1, OpenCV, and Scikit-Image. --- Pipeline pour segmenter des images de graines de féverole et extraire forme, taille et couleur dans un CSV avec SAM2.1, OpenCV et Scikit-Image.

Python-based image analysis pipeline to automate the evaluation of pork chops using computer vision and deep learning techniques [EN] / [FR] Pipeline d'analyse d'image basé sur Python utilisant des techniques de vision par ordinateur et d'apprentissage profond pour automatiser l'évaluation des côtelettes de longe de porc centrales

Website for the Phenomics and Machine Learning Team

This is a public repository for relevant code from the publication of the same name.

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

my snippets and notes for compact plants phenomics center at WSU