An efficient genetic data imputation pipeline

An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infe…

Step-by-step guide to different types of phasing and testing their accuracy

A pipeline to select the best K (number of clusters) for fastPHASE imputation and phasing.

Frequency-based amplicon phasing in R