A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
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Oct 8, 2025 - Nextflow
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ngs-pipeline
Here are 9 public repositories matching this topic...
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
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Nov 5, 2025 - Nextflow
A simple fastp-MultiQC nextflow pipeline
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Feb 2, 2023 - Nextflow
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
workflow nanopore pipeline nextflow assembly denovo genome-assembly denovo-assembly ngs-pipeline nanopore-sequencing nf-core hybrid-assembly
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Dec 19, 2022 - Nextflow
Nextflow-powered Dragonflye Pipeline for Assembling Genomes from Nanopore and Illumina Reads
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Nov 2, 2024 - Nextflow
How to channel sequencing reads from multiple subdirectories into nextflow pipeline
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Oct 13, 2022 - Nextflow
HPV Pipeline (Human Papilloma Virus) is a bioinformatic pipeline designed to run Next-Generation Sequence reads to identify and genotype HPV infections in human specimens.
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Nov 16, 2021 - Nextflow
HRV (human respiratory virus) Pipeline is a bioinformatic pipeline for the analysis of Illumina Next-Generation-Sequencing (NGS) for the discovery and GenBank submission of Human Respiratory Virus Genomes.
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Dec 18, 2021 - Nextflow
A Nextflow pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.
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Mar 25, 2025 - Nextflow
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