A collection of unexpected challenges and learnings with nextflow and nf-core.

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.

GitHub Action to launch a workflow using Nextflow Tower.

A fast, easy way to present complex bioinformatics pipelines to biologists

A tool for running bioinformatics workflows on a Kubernetes cluster

Nextflow hackathon 2017 projects

A playground to explore how to implement things in Nextflow and nf-core

A Nextflow variant normalization pipeline based on vt and bcftools

Nextflow pipeline for standardised variant calls on canine genomes

GitHub Action to run nf-core code linting on a Nextflow pipeline

Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.

Conda recipes for the Eel project

Workflow management system benchmark

WIP & POC: Count Viral and other non-human genome signatures in Human NGS data

Use Nextflow as a video pipeline :D

Nextflow script for processing WGS data

A parallelised pipeline for the analysis of RNA sequencing data. This repository is part of Imperial College London's ReCoDE project, which aims to support teaching and learning in research computing and data science.