nextclade

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snakemake phylogenetics nextstrain virus-evolution nextclade

Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing

pangolin artic covid-19 sars-cov-2 nextclade

A template for building a custom Enterovirus Nextclade dataset

template nextclade enterovirus

nextclade enterovirus cva16

Snakemake pipeline for creating a Nextclade dataset for Enterovirus D68

nextclade enterovirus ev-d68

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