Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
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Feb 2, 2026 - Python
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neuroscience-methods
Here are 36 public repositories matching this topic...
Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿🔬
neuroscience computational-neuroscience neural-networks brain-network neuroscience-methods mean-field-theory brain-simulations brain-modeling
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Nov 13, 2025 - Python
a visualization method for neural data
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Apr 4, 2025 - Python
Closed-loop behavioral experiment toolkit using pose estimation of body parts.
behavior-analysis animal-behavior neuroscience-methods animal-science deeplabcut closed-loop-experiments
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Jul 1, 2023 - Python
Toolbox for analyzing behavioral videos and neural activity
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Dec 3, 2023 - Python
Tools and functions for neural data processing and analysis in python
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Jan 6, 2026 - Python
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
neuroscience neuroimaging neuroinformatics python-package data-curation neuroscience-methods neuroimaging-data-science data-organization
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Jan 23, 2026 - Python
Gaussian-Processes Surrogate Optimisation in python
neuroscience python3 gaussian-processes optimisation neuroscience-methods bayesian-optimisation gpflow space-partition-tree gaussian-processes-surrogate scale-biophysical-models partition-tree brainweb
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May 18, 2021 - Python
HNCcorr algorithm for neuron identification in calcium imaging datasets.
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Feb 11, 2023 - Python
Automated and reproducible analysis of multiphoton imaging datasets
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Jan 12, 2026 - Python
The Brain Predictability toolbox (BPt), is a python based Machine Learning library designed primarily for tabular and neuroimaging specific neuroimaging data but can easily be generalized further.
python data-science machine-learning sklearn ml neuroscience pandas data-analysis neuroimaging-data bp neuroscience-methods bpt brain-predictability-toolbox
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Dec 14, 2022 - Python
Swap facial landmarks(or whole facial area) for the part-whole task with OpenCV + dlib and MediaPipe.
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Sep 14, 2021 - Python
Derotate images acquired via multiphoton calcium imaging
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Feb 13, 2026 - Python
A comprehensive Python and R-based toolkit for clustering and sorting electrophysiology data recorded using Intan RHD2132 chips. Originally developed for cortical multi-electrode recordings in the Katz Lab at Brandeis University, it provides a complete pipeline for spike sorting, EMG analysis, and quality assessment.
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Feb 16, 2026 - Python
Open-source neurocognitive test battery written in Python
python pyqt5 neuroscience psychology psychophysics pyqt psychology-experiments python36 cognitive-neuroscience neuroscience-methods
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Dec 3, 2018 - Python
Analysis and visualization of calcium imaging data from retrosplenial cortex
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Oct 28, 2024 - Python
A setup to evaluate working memory using EEG signals
neuroscience streams eeg dms lsl neurofeedback psychopy pexpect labstreaminglayer working-memory neuroscience-methods keypresses pylsl sternberg
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Dec 9, 2022 - Python
Neural oscillation event detection and analysis
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Nov 3, 2023 - Python
A generalized framework for multisensory integration modeling
neuroscience computational-neuroscience multisensory-integration neuroscience-methods computational-models
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Jul 25, 2025 - Python
Mesmerize plugin for the napari viewer
neuroscience neuroimaging calcium-imaging neuroscience-methods neuroscience-data calcium-imaging-analysis
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Oct 29, 2022 - Python
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