microscopy

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

Manual, source-code and binaries for the NanoJ-Fluidics project

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

Z-stack Depth Colorcode ImageJ FIJI plugin

ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

Curve tracing ImageJ plugin

Microscope control and image acquisition integrated with ImageJ.

Adaptive Optics plugin for MicroManager

tipi4icy is a collection of Icy plugins based on TiPi

PURE-LET image deconvolution

ImageJ plugin for the fast generation of microscopy PSF

A Fiji plugin for object detection and tracking based on MaskRCNN.

spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)

My autofocus algorithm using computer vision embedded in an Android application.

Open Microscopy Environment inteGrated Analysis (OMEGA) is a cross-platform data management, analysis and visualization system, for particle tracking data with particular emphasis on results from viral and vesicular trafficking experiments.

Toolkit for simulating real-time control systems for super-resolution microscopy.

Digital Holographic Microscopy plugin for ImageJ. Allows realistic simulation and real-time reconstruction of single-shot holograms.

QuIET - QuPath Image Export Toolkit: batch export images for publication or model training

This project aims to develop a software tool for retrieving and analyzing iDPC images to provide high-resolution images with minimal distortion

Automated detection of nuclei and DNA damage in Caenorhabditis elegans germline