MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
Single cell Morphology Quality Control (coSMicQC)
🔬Python package for high-throughput single-cell imaging analysis.
CellLocator: Automated live-cell image analysis for Incucyte®. Streamlined cell segmentation, fluorescence quantification, and kinetic analysis. Open-source and freely available under the MIT License.
A Napari plugin for automated cell nuclei detection, cell proliferation & population growth analysis, and single-cell tracking in brightfield and fluorescence microscopy images
This repository summarizes our group's previous work on cellular image analysis in parasite microbiology.
An application for automated high-throughput analysis of cancer and endothelial cell dynamics in hydrogels.
Computer vision tool using Tensorflow and Keras to train U-Net and U-Net++ with the optional use of EfficientNetB7 as a pretrained backbone for binary segmentation of microscopy images
Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"
count lipid droplets in tetrahymena thermophila with Python
Multi-Orientation MAXWELL: A novel approach to three-dimensional super resolution mapping of X-ray excited, visible light emitting fluorophores using the X-ray Light Sheet Microscopy technique MAXWELL.
Uses a segmentation NN to count organoids in brightfield images.
DAPI nuclei counter with proliferation analysis
A sophisticated all-in-one FRET Tool developed by SONLab Team
nnU-Net-based Tumor Spheroids Auto Delineation
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