mappability

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Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

python bioinformatics quality-control algorithm analysis cython pypi bigwig chip-seq bam cross-correlation mappability

Generate mappability tracks as BigWig file from genome fasta with GEM

Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes

gem genome repeats ngs genome-annotation genome-browser bowtie zebrafish mappability alignability danio-rerio tsslab

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