🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

Scripts for the Nature Biotechnology paper, 2020: Automated assembly of centromeres from ultra-long error-prone reads

PuntSeq - Chasing the microbial diversity of Cambridge's freshwater

NanoSwe: Analysing nanopore (PromethION) data of Swedish genomes

An algorithm for centromere assembly using long error-prone reads

Benchmarking variant callers for long read data

Coronavirus (SARS-Cov-2) sequencing analysis

Extreme lateral gene transfer into a fly autosome

MinION Open-source Nucleotide Identifier for Continuous Analysis - Software for MinION sequencing quantitative metagenomic analysis in real time

A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)

Additional data for matser_thesis in UST

A pipeline for high-quality bacterial genome construction using ONT sequencing

Comparing 3 different metagenomics approaches with ONT's long read sequencing method

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Identify inserted or deleted sequences from assemblies.

scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

Transcriptome long-read orientation with Deep Learning

a fastx parser for generating sequence length metrics