Repository for miscellaneous bioinformatics scripts that may be useful to others.

Scripts for making chain file for mm10 - ms10 liftover

Lift same species genome co-ordinates from one assembly to another

Go Language implementation of LiftOver

work for creating hg38 database files from hg19 sources

a python pipeline to generate chain files between different genome assemblies for LiftOver.

Inter-sample analysis of SQANTI classifications

Fast liftover

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

An efficient genetic data imputation pipeline

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

A Go-written server for 23andMe-formatted raw data liftover

A fast and efficient tool for converting chromatin interaction data between genome assemblies

Same species annotation lift over pipeline.

Lifterover copy number segments in whole

Perform liftover on plink files

liftover for python, made fast with cython

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)