kraken2

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A pipeline to investigate horizontal gene transfer from NGS data

taxonomies workflow pipeline nextflow ngs tidyverse multiqc samtools bwa-mem horizontal-gene-transfer genomics-visualization fastqc nf-core krona kraken2 bwa-mem2 ggbio

A simple nextflow pipeline for running kraken2 and bracken in a docker container

pipeline nextflow metagenomics kraken2 bracken

A bare-bones, ridiculously simple metagenomics pipeline for viruses using Kraken 2 written in Nextflow.

bioinformatics pipeline nextflow metagenomics viral kraken2

An intuitive tutorial on Kraken2 metagenomic analysis

bash nextflow container singularity linux-desktop hpc-cluster kraken2

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