An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

Create 3d rooms in blender from floorplans.

cell detection in calcium imaging recordings

Operator Discretization Library https://odl.readthedocs.io/

Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".

starfish: unified pipelines for image-based transcriptomics

High performance spatial analysis in a web browser and across programming languages and hardware architectures

Deep and Machine Learning for Microscopy

Automated 3D cell detection in very large images

Differentiable Computational Lithogrpahy Framework

A Python package housing a collection of deep-learning multi-modal data fusion method pipelines! From data loading, to training, to evaluation - fusilli's got you covered 🌸

BIDScoin converts your source-level neuroimaging data to BIDS

Astra: an open-source observatory control software.

Differentiable wave optics simulation library built on PyTorch

A Slicer extension to provide a GUI around pyradiomics

scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

CLI for converting images to seamless tiles

A python package for Abel and inverse Abel transforms

nii2dcm: NIfTI to DICOM creation with Python

Self-supervised models for encoding protein localization patterns from microscopy images