A Toolbox for Spatial Transcriptomics Analysis

🎨 Image processing toolbox for R

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Tools for Plant Image Analysis

An R package for conducting co-localization analysis. Edit

Framework for image and flow cytometry analysis

Image Fluency Scores in R

3D Analysis of confocal images of microbial biofilms/communities

HSM3 implements the Hasler and Süsstrunk M3 metric of image colourfulness

Automatic classification of bacterial species using Gram-stained images

A shiny based package to extract data from images by clicking on them

R Script for AI Image and Location Recognition that can also generate an automated prompt for AI text-generation of a social media post.

A Shiny App for visualizing and evaluating handwritten digits.

A Toolbox for Spatial Transcriptomics Analysis

Code repository for project focusing on blood cell detection and diagnostic prediction from peripheral blood slides

A webapp to make visualizing and analyzing CellPathfinder data easier. CellPathfinder is a high content cell image analysis software from Yokogawa. https://terrianl.shinyapps.io/GraphMaster9000/

This repository contains code used to develop an automated bleaching classifier in CoralNet (https://coralnet.ucsd.edu). See README for overview of code, and link to more information on the development of the classifier.

Single cell high-content analysis of three-color immunocytochemistry image data

An R-based system for checking and shrinkage quantification using disc-derived wedges

TubAR (Tuber Analysis in R) provides potato researchers with a simple means of quantitative phenotyping of tuber images through R.