seqan / seqan Star 488 Code Issues Pull requests SeqAn's official repository. high-performance cpp14 indexing simd alignment bwt fasta blast fastq-format bioinfomatics suffixarray sequence-alignments seqan htslib sam-bam Updated Feb 27, 2025 C++
Illumina / paragraph Star 156 Code Issues Pull requests Graph realignment tools for structural variants vcf variant-calling htslib structural-variation genotyping Updated Dec 8, 2022 C++
walaj / SeqLib Star 138 Code Issues Pull requests C++ htslib/bwa-mem/fermi interface for interrogating sequence data c-plus-plus sequence-alignments htslib bwa-mem fermi Updated Aug 9, 2024 C++
Zilong-Li / vcfpp Star 22 Code Issues Pull requests a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc. bioinformatics genomics vcf population-genetics htslib variant-analysis Updated Nov 27, 2024 C++
lindenb / x11hts Star 5 Code Issues Pull requests X11 related utilities for hts visualization bioinformatics hts x11 sam bam htslib cnv Updated May 10, 2019 C++
adamjorr / kbbq Star 2 Code Issues Pull requests reference-free base quality score recalibration bioinformatics genomics htslib fastq kmers Updated Oct 16, 2020 C++
lindenb / htsplusplus Star 1 Code Issues Pull requests Select variants from VCF/BCF spaced by a distance 'd'. c bioinformatics distance vcf variants htslib bcf Updated Nov 18, 2024 C++
sethbrin / cpp-htslib Star 0 Code Issues Pull requests A wrapper of htslib genomics cpp11 htslib Updated May 2, 2017 C++
tt6746690 / htsget Star 0 Code Issues Pull requests A server implementation of htsget protocol htslib samtools htsget Updated Aug 25, 2017 C++