HCR probe designer with Shiny graphical user interface
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Updated
Aug 7, 2025 - R
HCR probe designer with Shiny graphical user interface
Framework to allow a hot swap of classes in runtime
End-to-end HCR R&D: from HOG+XGBoost baseline to CNN hyperparameter optimization and Ensemble+TTA, achieving 93.16% accuracy with rigorous error analysis.
EASI-Probe / hcrkit in-situ probe designer — browser version (runs entirely in the page via Pyodide). Built from the private EASI-Probe repository.
ND2 -> per-nucleus gene-intensity tables -> ICP-registered composite embryo atlas, for multiplexed HCR microscopy
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