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gotoh-algorithm

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lignum-vitae / goombay

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Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.

smith-waterman needleman-wunsch jaro-winkler levenshtein-distance alignment longest-common-subsequence sequence-alignment hamming-distance jaro longest-common-substring shortest-common-supersequence gotoh hirschberg gotoh-algorithm waterman-smith-beyer
  • Updated Jul 2, 2025
  • Python

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