Official git repository for Biopython (originally converted from CVS)

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Data intensive science for everyone.

🧬 gget enables efficient querying of genomic reference databases

Scripts to download genomes from the NCBI FTP servers

Cloud-native genomic dataframes and batch computing

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Python library to handle Gene Ontology (GO) terms

Python library to facilitate genome assembly, annotation, and comparative genomics

Tools to process and analyze deep sequencing data.

Fast genome-wide functional annotation through orthology assignment

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Performant Pythonic GenomicRanges

Efficient pythonic random access to fasta subsequences

🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

Structural variant toolkit for VCFs

A genome visualization python package for comparative genomics

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

BioMCP: Biomedical Model Context Protocol

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling