Official implementation of "Self-contrastive learning enables interference-resilient and generalizable fluorescence microscopy signal detection without interference modeling."
Resolution Enhancement Algorithm using Deblurring by Pixel Reassignment. This repository implements cutting-edge techniques for improving image resolution and clarity by reassigning pixels to correct for blur. Ideal for microscopy, photography, image processing, and computational optics researchers.
PSF Generator: a PyTorch-based library to simulate point spread functions for microscopes.
BrightEyes Time-tagging module: open-source hardware, a time to digital converter, multi channels, with a resolution of 30 ps designed for fluorescence scanning laser microscopy.
An open-source tool for characterizing PSF and FWHM measurements from light-microscopic 2D and 3D images of microspheres.
This repository contains the code for Neural fields for Adaptive Optical Two-photon Fluorescence Microscopy (NeAT).
A MATLAB data analysis toolkit for Fluorescence Lifetime Imaging Microscopy (FLIM) and an Alba v5 time-resolved confocal microscope operations manual
Repository with code for Fluocells Neuronal Cells v2 dataset.
Software for automated analysis of single molecule fluorescence and FRET (smFRET) data
This is an open-source macroscope design based on the Olympus 4x/0.28 objective.
An image analysis pipeline for quantifying the spatial distribution of cell markers in stroma-rich tumors
A PowerShell script that logs the real-time power of a laser line on a CELESTA Light Engine® (and a data visualization/analysis script that estimates the exposure time)
Modular, high-resolution light-sheet microscopes for accessible 3D subcellular imaging.
Single-cell CFTR image-analysis pipeline for the mCherry-YFPCFTR quenching assay. The pipeline includes a custom-made Cellpose model for image segmentation, and per-cell quantification of CFTR membrane proximity and function.
Semi-automated ImageJ macro for cerebellar lobule segmentation and length quantification. Supports boundary detection, Purkinje cell-based mask refinement, and ROI export for downstream analysis.
Machine learning tool for analysing single molecule tracking data
A modular web platform for automated fluorescence microscopy image analysis
A python code for analyzing photobleaching in fluorescence microscopy from a time series TIF image stack
Used for making overviews of larger batches of images obtained with cells under various condition. Initialized as GUI-based format, which can be modified, as more functionalities are added along the way.
Fiji/ImageJ plugin with a Jython GUI for four-channel microscopy preprocessing, channel-3 segmentation, ROI-guided cell detection, and per-cell multichannel quantification.
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