Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

genomic alignment similarity search tool

Evolutionary Bioinformatics Toolkit (EBT)

Split multi fasta file into single fasta files

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

Shuffle the string sequences such that the k-mer frequency is preserved in each string

SEquence DAtaset builder

A fully integrated K-mer Informed Toolkit for Bioinformatics

Sequence clustering and database creation using mmseqs, from local fasta files

A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data

Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!

A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only.

Program to clean DNA fasta sequences

omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…

A small fasta CLI toolkit developed in Rust

Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.

A small collection of one-liners in a one bash script for fasta files processing.