Nextflow DSL2 pipeline for PacBio HiFi variant calling. Supports minimap2 and pbmm2 alignment with bcftools, Clair3, and DeepVariant variant callers. Fully containerized with Docker. Packaged with benchmarking tools for method validation and testing.
docker bioinformatics genomics nextflow pacbio variant-calling hifi minimap2 nextflow-pipeline dsl2 longreadsequencing
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Updated
Mar 16, 2026 - HTML