G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

DNAssist: the integrated editing and analysis of molecular biology sequences in Windows

BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool

A pure python lazy BAM parser

A couple of assignments I did for a course in computational (molecular) biology @ University of Warsaw

Guide to download NCBI Bioproject sequencing data and script to generate DNA short read alignment dataset from the data.

DNA barcoding analysis pipeline

This is a bunch of programs I created in the 2020 Intermediate Coding For Medicine Course. No Stealing.

Parallel-DNA-Sequence-Alignment

This is a repo for the algorithms solutions towards the DNA alignment problem. I adopt two ways to solve the problem: dp and Divide n' Conquer

Bowtie2 v2.5.2 Dockerfile Native for Apple M1+ Silicon (ARM64) and Intel/AMD (x86_64) Containers

A program that enables biologists to score the similarity between DNA sequences and view the aligned portions

web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.

Import and export .SAM (Sequence Alignment/Map format) files in Mathematica

The project is based on the paper Sequence Alignment by Cross-Correlation and bridges the gap between the knowledge and an useful implementation.