#
cutadapt
Here are 3 public repositories matching this topic...
Fred's metabarcoding pipeline with Nextflow
bioinformatics nextflow taxonomy reproducible-research swarm edna metabarcoding amplicon cutadapt asv vsearch chimera-detection
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Updated
Jul 24, 2026 - Python
Automated environmental DNA (eDNA) metabarcoding pipeline for converting NCBI SRA sequencing data into taxonomically annotated species tables.
genomics python3 linux-shell data-analysis blast edna ecology metabarcoding ncbi-blast hpc-cluster cutadapt wsl-ubuntu usearch sra-toolkit unoise
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Updated
Aug 8, 2026 - Python
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